Automated classification of bacterial particles in flow by multiangle scatter measurement and support vector machine classifier.

نویسندگان

  • Bartek Rajwa
  • Murugesan Venkatapathi
  • Kathy Ragheb
  • Padmapriya P Banada
  • E Daniel Hirleman
  • Todd Lary
  • J Paul Robinson
چکیده

Biological microparticles, including bacteria, scatter light in all directions when illuminated. The complex scatter pattern is dependent on particle size, shape, refraction index, density, and morphology. Commercial flow cytometers allow measurement of scattered light intensity at forward and perpendicular (side) angles (2 degrees <or= theta(1) <or= 20 degrees and 70 degrees <or= theta(2) <or= 110 degrees, respectively) with a speed varying from 10 to 10,000 particles per second. The choice of angle is dictated by the fact that scattered light in the forward region is primarily dependent on cell size and refractive index, whereas side-scatter intensity is dependent on the granularity of cellular structures. However, these two-parameter measurements cannot be used to separate populations of cells of similar shape, size, or structure. Hence, there have been several attempts in flow cytometry to measure the entire scatter patterns. The published concepts require the use of unique custom-built flow cytometers and cannot be applied to existing instruments. It was also not clear how much information about patterns is really necessary to separate various populations of cells present in a given sample. The presented work demonstrates application of pattern-recognition techniques to classify particles on the basis of their discrete scatter patterns collected at just five different angles, and accompanied by the measurement of axial light loss. The proposed approach can be potentially used with existing instruments because it requires only the addition of a compact enhanced scatter detector. An analytical model of scatter of laser beams by individual bacterial cells suspended in a fluid was used to determine the location of scatter sensors. Experimental results were used to train the support vector machine-based pattern recognition system. It has been shown that information provided just by five angles of scatter and axial light loss can be sufficient to recognize various bacteria with 68-99% success rate.

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Automated classification and recognition of bacterial particles in flow by multi-angle scatter measurement and a support-vector machine classifier

Bartek Rajwa, Murugesan Venkatapathi, Kathy Ragheb, Padmapriya P. Banada, E. Daniel Hirleman, Todd Lary, and J. Paul Robinson Purdue University Cytometry Laboratories, Bindley Bioscience Center, 1203 W. State Street; School of Mechanical Engineering, 585 Purdue Mall; Molecular Food Microbiology Laboratory, Department of Food Science, 745 Agriculture Mall Drive, Purdue University, West Lafayette...

متن کامل

Fault diagnosis in a distillation column using a support vector machine based classifier

Fault diagnosis has always been an essential aspect of control system design. This is necessary due to the growing demand for increased performance and safety of industrial systems is discussed. Support vector machine classifier is a new technique based on statistical learning theory and is designed to reduce structural bias. Support vector machine classification in many applications in v...

متن کامل

Support Vector Machine Based Facies Classification Using Seismic Attributes in an Oil Field of Iran

Seismic facies analysis (SFA) aims to classify similar seismic traces based on amplitude, phase, frequency, and other seismic attributes. SFA has proven useful in interpreting seismic data, allowing significant information on subsurface geological structures to be extracted. While facies analysis has been widely investigated through unsupervised-classification-based studies, there are few cases...

متن کامل

تحلیل ممیز غیرپارامتریک بهبودیافته برای دسته‌بندی تصاویر ابرطیفی با نمونه آموزشی محدود

Feature extraction performs an important role in improving hyperspectral image classification. Compared with parametric methods, nonparametric feature extraction methods have better performance when classes have no normal distribution. Besides, these methods can extract more features than what parametric feature extraction methods do. Nonparametric feature extraction methods use nonparametric s...

متن کامل

Feature Selection Using Multi Objective Genetic Algorithm with Support Vector Machine

Different approaches have been proposed for feature selection to obtain suitable features subset among all features. These methods search feature space for feature subsets which satisfies some criteria or optimizes several objective functions. The objective functions are divided into two main groups: filter and wrapper methods.  In filter methods, features subsets are selected due to some measu...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:
  • Cytometry. Part A : the journal of the International Society for Analytical Cytology

دوره 73 4  شماره 

صفحات  -

تاریخ انتشار 2008